Transcript: lnc-PLCD3-3:1

Basic information

LNCipedia transcript ID: lnc-PLCD3-3:1 
LNCipedia gene ID: lnc-PLCD3-3
Ensembl Gene ID: ENSG00000267288
Ensembl Transcript ID: ENST00000589451
Location (hg38): chr17:45170682-45171584
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 547 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT054027; ENST00000589451.1
Alternative gene names: ENSG00000267288.1; RP13-890H12.2; ENSG00000267288.2; AC138150.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -185.9126 non-coding 
CPAT coding probability 11.42% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PLCD3-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PLCD3-3:1
4.0 lnc-PLCD3-3:1
4.1 lnc-PLCD3-3:1
5.0 lnc-PLCD3-3:1
5.1 lnc-GFAP-18:1
5.2 lnc-PLCD3-3:1