Transcript: lnc-PLCD3-3:2

Basic information

LNCipedia transcript ID: lnc-PLCD3-3:2 
LNCipedia gene ID: lnc-PLCD3-3
RefSeq ID: NR_135646
Location (hg38): chr17:45168805-45171485
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2048 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT054026; ENST00000589796.1; NR_135646.1
Alternative gene names: ENSG00000267288.1; RP13-890H12.2; LOC105371795


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -72.9827 non-coding 
CPAT coding probability 25.99% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PLCD3-3:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PLCD3-3:2
4.0 lnc-PLCD3-3:2
4.1 lnc-PLCD3-3:2
5.0 lnc-PLCD3-3:2
5.1 lnc-GFAP-18:2
5.2 lnc-PLCD3-3:2