Transcript: lnc-PLCD3-4:3

Basic information

LNCipedia transcript ID: lnc-PLCD3-4:3 
LNCipedia gene ID: lnc-PLCD3-4
Ensembl Gene ID: ENSG00000224505
Ensembl Transcript ID: ENST00000589950
Location (hg38): chr17:45150400-45161510
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 570 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT054020; ENST00000589950.1
Alternative gene names: ENSG00000224505.2; AC002117.1; AC138150.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -62.8325 non-coding 
CPAT coding probability 0.14% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PLCD3-4:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PLCD3-1:3
4.0 lnc-PLCD3-1:3
4.1 lnc-PLCD3-1:3
5.0 lnc-PLCD3-1:3
5.1 lnc-GFAP-17:3
5.2 lnc-PLCD3-4:3