Transcript: lnc-PLCG1-1:1

Basic information

LNCipedia transcript ID: lnc-PLCG1-1:1 
LNCipedia gene ID: lnc-PLCG1-1
Location (hg38): chr20:41180456-41196787
Strand: +
Class: sense-overlapping
Sequence Ontology term: sense_overlap_ncRNA
Transcript size: 498 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000423733.1; RP3-511B24.5-001; OTTHUMT00000079236.1; NONHSAT079765
Alternative gene names: ENSG00000225915.2; RP3-511B24.5; OTTHUMG00000032478.1; ENSG00000272029.1; RP3-511B24.6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 6.9562 non-coding 
CPAT coding probability 6.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PLCG1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PLCG1-1:1
4.0 lnc-PLCG1-1:1
4.1 lnc-PLCG1-1:1
5.0 lnc-PLCG1-1:1
5.1 lnc-STK4-95:1
5.2 lnc-PLCG1-1:1