Transcript: lnc-PLCG2-1:13

Basic information

LNCipedia transcript ID: lnc-PLCG2-1:13 
LNCipedia gene ID: lnc-PLCG2-1
Location (hg38): chr16:81739626-81767706
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 632 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000569731.1; RP11-960L18.1-006; OTTHUMT00000432427.1; NONHSAT143964
Alternative gene names: ENSG00000261218.1; RP11-960L18.1; OTTHUMG00000176531.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -105.2308 non-coding 
CPAT coding probability 5.01% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PLCG2-1:13 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CMIP-1:8
4.0 lnc-PLCG2-1:13
4.1 lnc-PLCG2-1:13
5.0 lnc-PLCG2-1:13
5.1 lnc-CRISPLD2-60:15
5.2 lnc-PLCG2-1:13