Transcript: lnc-PLCG2-1:5

Basic information

LNCipedia transcript ID: lnc-PLCG2-1:5 
LNCipedia gene ID: lnc-PLCG2-1
Location (hg38): chr16:81739074-81740578
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 596 bp
Exons: 3
Sources: Broad Institute
Alternative transcript names: TCONS_00024256
Alternative gene names: XLOC_011801; linc-PLCG2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -133.899 non-coding 
CPAT coding probability 1.10% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PLCG2-1:5 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PLCG2-1:1
3.1 lnc-CMIP-1:2
4.0 lnc-PLCG2-1:5
4.1 lnc-PLCG2-1:5
5.0 lnc-PLCG2-1:5
5.1 lnc-CRISPLD2-60:8
5.2 lnc-PLCG2-1:5