Transcript: lnc-PLCG2-1:9

Basic information

LNCipedia transcript ID: lnc-PLCG2-1:9 
LNCipedia gene ID: lnc-PLCG2-1
Ensembl Gene ID: ENSG00000261218
Ensembl Transcript ID: ENST00000563954
Location (hg38): chr16:81739103-81766772
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 480 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000563954.1; RP11-960L18.1-005; OTTHUMT00000432424.1; NONHSAT143961; ENST00000563954.5
Alternative gene names: ENSG00000261218.1; RP11-960L18.1; OTTHUMG00000176531.1; ENSG00000261218.5; AC099524.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 0.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PLCG2-1:9 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CMIP-1:5
4.0 lnc-PLCG2-1:9
4.1 lnc-PLCG2-1:9
5.0 lnc-PLCG2-1:9
5.1 lnc-CRISPLD2-60:12
5.2 lnc-PLCG2-1:9