Transcript: lnc-PLEKHA5-3:2

Basic information

LNCipedia transcript ID: lnc-PLEKHA5-3:2 
LNCipedia gene ID: lnc-PLEKHA5-3
Location (hg38): chr12:19651709-19653978
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 853 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00020353; NONHSAT027211
Alternative gene names: XLOC_009683; linc-PDE3A-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -47.0469 non-coding 
CPAT coding probability 0.10% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PLEKHA5-3:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PLEKHA5-3:2
3.1 lnc-PLEKHA5-3:2
4.0 lnc-PLEKHA5-3:2
4.1 lnc-PLEKHA5-3:2
5.0 lnc-PLEKHA5-3:2
5.1 lnc-BCL2L14-102:4
5.2 lnc-PLEKHA5-3:2