Transcript: lnc-PLEKHA5-3:4

Basic information

LNCipedia transcript ID: lnc-PLEKHA5-3:4 
LNCipedia gene ID: lnc-PLEKHA5-3
Location (hg38): chr12:19602826-19651479
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 676 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00020351; NONHSAT027208
Alternative gene names: XLOC_009682; linc-PDE3A-4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -88.3018 non-coding 
CPAT coding probability 0.77% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PLEKHA5-3:4 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PLEKHA5-2:1
3.1 lnc-PLEKHA5-2:1
4.0 lnc-PLEKHA5-3:4
4.1 lnc-PLEKHA5-3:4
5.0 lnc-PLEKHA5-3:4
5.1 lnc-BCL2L14-102:1
5.2 lnc-PLEKHA5-3:4