Transcript: lnc-PLEKHA5-4:1

Basic information

LNCipedia transcript ID: lnc-PLEKHA5-4:1 
LNCipedia gene ID: lnc-PLEKHA5-4
Location (hg38): chr12:19671159-19673258
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 483 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00020354; NONHSAT027212
Alternative gene names: XLOC_009684; linc-PDE3A-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -102.7782 non-coding 
CPAT coding probability 1.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PLEKHA5-4:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PLEKHA5-4:1
3.1 lnc-PLEKHA5-4:1
4.0 lnc-PLEKHA5-4:1
4.1 lnc-PLEKHA5-4:1
5.0 lnc-PLEKHA5-4:1
5.1 lnc-BCL2L14-103:1
5.2 lnc-PLEKHA5-4:1