Transcript: lnc-PLEKHA8-3:3

Basic information

LNCipedia transcript ID: lnc-PLEKHA8-3:3 
LNCipedia gene ID: lnc-PLEKHA8-3
Location (hg38): chr7:29988579-30025600
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 914 bp
Exons: 4
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000227014.1|ENST00000422239.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -96.8639 non-coding 
CPAT coding probability 0.64% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PLEKHA8-3:3 no no no no

Available literature

  1. Ellinger (2015), The long non-coding RNA lnc-ZNF180-2 is a prognostic biomarker in patients with clear cell renal cell carcinoma., Am J Cancer Res


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-PLEKHA8-3:3
5.0 lnc-PLEKHA8-3:3
5.1 lnc-MTURN-5:1
5.2 lnc-PLEKHA8-3:3