Transcript: lnc-PLEKHJ1-1:1

Basic information

LNCipedia transcript ID: lnc-PLEKHJ1-1:1 
LNCipedia gene ID: lnc-PLEKHJ1-1
Ensembl Gene ID: ENSG00000267122
Ensembl Transcript ID: ENST00000585593
Location (hg38): chr19:2212029-2215565
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2738 bp
Exons: 2
Sources: Biogazelle lncRNA chip; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000500296; NONHSAT060409; ENST00000585593.1
Alternative gene names: ENSG00000246306; ENSG00000267122.1; AC004490.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 42.5693 non-coding 
CPAT coding probability 8.95% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-PLEKHJ1-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PLEKHJ1-1:1
3.1 lnc-PLEKHJ1-1:1
4.0 lnc-PLEKHJ1-1:1
4.1 lnc-PLEKHJ1-1:1
5.0 lnc-PLEKHJ1-1:1
5.1 lnc-ZNF77-42:1
5.2 lnc-PLEKHJ1-1:1