Transcript: lnc-PLEKHM1-12:1

Basic information

LNCipedia transcript ID: lnc-PLEKHM1-12:1 
LNCipedia gene ID: lnc-PLEKHM1-12
Ensembl Gene ID: ENSG00000265964
Ensembl Transcript ID: ENST00000580347
Location (hg38): chr17:45733353-45734669
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 560 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000580347.1; RP11-293E1.1-001; OTTHUMT00000441152.1; NONHSAT054178
Alternative gene names: ENSG00000265964.1; RP11-293E1.1; OTTHUMG00000178245.1; AC217774.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -165.119 non-coding 
CPAT coding probability 5.51% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PLEKHM1-12:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC091132.2-2:1
4.0 lnc-AC091132.2-2:1
4.1 lnc-AC091132.2-2:1
5.0 lnc-AC091132.2-2:1
5.1 lnc-GFAP-41:1
5.2 lnc-PLEKHM1-12:1