Transcript: lnc-PLEKHM1-1:2

Basic information

LNCipedia transcript ID: lnc-PLEKHM1-1:2 
LNCipedia gene ID: lnc-PLEKHM1-1
Location (hg38): chr17:45475597-45490749
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 550 bp
Exons: 5
Sources: NONCODE v4
Alternative transcript names: NONHSAT054124
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 62.9088 coding 
CPAT coding probability 17.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-PLEKHM1-1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ARHGAP27-1:3
4.0 lnc-AC091132.2-1:3
4.1 lnc-AC091132.2-1:3
5.0 lnc-AC091132.2-1:3
5.1 lnc-GFAP-32:1
5.2 lnc-PLEKHM1-1:2