Transcript: lnc-PLEKHO1-1:2

Basic information

LNCipedia transcript ID: lnc-PLEKHO1-1:2 
LNCipedia gene ID: lnc-PLEKHO1-1
Location (hg38): chr1:150162681-150181000
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 322 bp
Exons: 4
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00002161; NONHSAT006275
Alternative gene names: XLOC_000401; linc-CA14


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -111.6381 non-coding 
CPAT coding probability 11.84% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PLEKHO1-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PLEKHO1-1:1
3.1 lnc-PLEKHO1-1:2
4.0 lnc-PLEKHO1-1:2
4.1 lnc-PLEKHO1-1:2
5.0 lnc-PLEKHO1-1:2
5.1 lnc-CA14-4:3
5.2 lnc-PLEKHO1-1:2