Transcript: lnc-PLET1-1:2

Basic information

LNCipedia transcript ID: lnc-PLET1-1:2 
LNCipedia gene ID: lnc-PLET1-1
Ensembl Gene ID: ENSG00000255484
Ensembl Transcript ID: ENST00000525984
RefSeq ID: NR_104155
Location (hg38): chr11:112534220-112555802
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2067 bp
Exons: 4
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000525984.2; NR_104155.1
Alternative gene names: ENSG00000255484.2; RP11-65M17.1; AP003063.2; LOC387810


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -128.9505 non-coding 
CPAT coding probability 33.23% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PLET1-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-C11orf34-1:2
4.1 lnc-C11orf34-1:2
5.0 lnc-C11orf34-1:2
5.1 lnc-DRD2-18:2
5.2 lnc-PLET1-1:2