Transcript: lnc-PLG-1:1

Basic information

LNCipedia transcript ID: lnc-PLG-1:1 
LNCipedia gene ID: lnc-PLG-1
Ensembl Gene ID: ENSG00000224477
Ensembl Transcript ID: ENST00000448126
Location (hg38): chr6:160698288-160700632
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 292 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00011406; ENST00000448126; ENST00000448126.1; RP1-81D8.3-001; OTTHUMT00000042954.1; NONHSAT115910; ENST00000448126.5
Alternative gene names: XLOC_005527; linc-PLG; ENSG00000224477; RP1-81D8.3; ENSG00000224477.1; OTTHUMG00000015954.1; ENSG00000224477.5; AL109933.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -90.2864 non-coding 
CPAT coding probability 3.64% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PLG-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PLG-1:1
3.1 lnc-PLG-1:1
4.0 lnc-PLG-1:1
4.1 lnc-PLG-1:1
5.0 lnc-PLG-1:1
5.1 lnc-SYTL3-29:1
5.2 lnc-PLG-1:1