Transcript: lnc-PLK1-1:5

Basic information

LNCipedia transcript ID: lnc-PLK1-1:5 
LNCipedia gene ID: lnc-PLK1-1
Location (hg38): chr16:23670011-23673127
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2463 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000502891; ENST00000566996.1; CTD-2196E14.9-001; OTTHUMT00000436065.1; NONHSAT141136
Alternative gene names: ENSG00000250707; ENSG00000260482.1; CTD-2196E14.9; OTTHUMG00000177265.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -6.1398 non-coding 
CPAT coding probability 9.82% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PLK1-1:5 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DCTN5-1:1
3.1 lnc-PLK1-1:1
4.0 lnc-DCTN5-1:4
4.1 lnc-DCTN5-1:4
5.0 lnc-DCTN5-1:4
5.1 lnc-TMC5-72:3
5.2 lnc-PLK1-1:5