Transcript: lnc-PLK1-1:7

Basic information

LNCipedia transcript ID: lnc-PLK1-1:7 
LNCipedia gene ID: lnc-PLK1-1
Ensembl Gene ID: ENSG00000260482
Ensembl Transcript ID: ENST00000565266
Location (hg38): chr16:23672132-23675499
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 372 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000565266.1; CTD-2196E14.4-002; OTTHUMT00000435293.1; NONHSAT141137
Alternative gene names: ENSG00000259806.2; CTD-2196E14.4; OTTHUMG00000177099.1; ENSG00000260482.3; CTD-2196E14.9; AC008870.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -2.9621 non-coding 
CPAT coding probability 1.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PLK1-1:7 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PLK1-1:2
4.0 lnc-DCTN5-1:6
4.1 lnc-DCTN5-1:6
5.0 lnc-DCTN5-1:6
5.1 lnc-TMC5-72:5
5.2 lnc-PLK1-1:7