Transcript: lnc-PLPP3-12:18

Basic information

LNCipedia transcript ID: lnc-PLPP3-12:18 
LNCipedia gene ID: lnc-PLPP3-12
Ensembl Gene ID: ENSG00000260971
Ensembl Transcript ID: ENST00000569425
Location (hg38): chr1:56248294-56258571
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1351 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000569425.1; RP11-504A18.1-001; OTTHUMT00000431164.1; NONHSAT003441; ENST00000569425.3
Alternative gene names: ENSG00000260971.1; RP11-504A18.1; OTTHUMG00000175839.1; ENSG00000260971.3; ENSG00000260971.4; AC119674.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -144.8072 non-coding 
CPAT coding probability 0.35% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PLPP3-12:18 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PPAP2B-2:1
4.0 lnc-PPAP2B-2:1
4.1 lnc-PPAP2B-2:1
5.0 lnc-PPAP2B-2:1
5.1 lnc-C8B-12:18
5.2 lnc-PLPP3-12:18