Transcript: lnc-PLPP3-2:5

Basic information

LNCipedia transcript ID: lnc-PLPP3-2:5 
LNCipedia gene ID: lnc-PLPP3-2
Location (hg38): chr1:56643604-56645008
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 814 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00001505
Alternative gene names: XLOC_000846; linc-PPAP2B


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -160.5281 non-coding 
CPAT coding probability 2.72% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PLPP3-2:5 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C1orf168-2:2
3.1 lnc-C1orf168-2:2
4.0 lnc-C1orf168-2:2
4.1 lnc-C1orf168-2:2
5.0 lnc-C1orf168-2:2
5.1 lnc-C8B-8:5
5.2 lnc-PLPP3-2:5