Transcript: lnc-PLXDC1-3:3

Basic information

LNCipedia transcript ID: lnc-PLXDC1-3:3 
LNCipedia gene ID: lnc-PLXDC1-3
Ensembl Gene ID: ENSG00000266588
Ensembl Transcript ID: ENST00000583161
Location (hg38): chr17:39003248-39013032
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 636 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000583161.1; RP1-56K13.5-002; OTTHUMT00000444075.1; NONHSAT053391
Alternative gene names: ENSG00000266588.1; RP1-56K13.5; OTTHUMG00000178947.1; AC006441.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -67.6125 non-coding 
CPAT coding probability 12.86% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PLXDC1-3:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FBXO47-3:1
4.0 lnc-PLXDC1-3:3
4.1 lnc-PLXDC1-3:3
5.0 lnc-PLXDC1-3:3
5.1 lnc-SRCIN1-22:3
5.2 lnc-PLXDC1-3:3