Transcript: lnc-PMAIP1-13:1

Basic information

LNCipedia transcript ID: lnc-PMAIP1-13:1 
LNCipedia gene ID: lnc-PMAIP1-13
Ensembl Gene ID: ENSG00000267061
Ensembl Transcript ID: ENST00000586841
Location (hg38): chr18:59563709-59568615
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 546 bp
Exons: 3
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT059565; ENST00000586841.1
Alternative gene names: ENSG00000267061.1; RP11-760L24.1; AC090213.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -30.2097 non-coding 
CPAT coding probability 7.11% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PMAIP1-13:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PMAIP1-13:1
4.0 lnc-PMAIP1-13:1
4.1 lnc-PMAIP1-13:1
5.0 lnc-PMAIP1-13:1
5.1 lnc-WDR7-41:1
5.2 lnc-PMAIP1-13:1