Transcript: lnc-PMEPA1-1:1

Basic information

LNCipedia transcript ID: lnc-PMEPA1-1:1 
LNCipedia gene ID: lnc-PMEPA1-1
Ensembl Gene ID: ENSG00000203971
Ensembl Transcript ID: ENST00000371169
Location (hg38): chr20:57957126-57959660
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1854 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00028074; ENST00000371169; ENST00000371169.1; RP13-379L11.2-001; OTTHUMT00000267816.1; NONHSAT080527
Alternative gene names: XLOC_013816; linc-PMEPA1-3; ENSG00000203971; RP13-379L11.2; ENSG00000203971.1; OTTHUMG00000137362.1; AL354984.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -75.4536 non-coding 
CPAT coding probability 86.85% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-PMEPA1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PMEPA1-1:1
3.1 lnc-PMEPA1-1:1
4.0 lnc-PMEPA1-1:1
4.1 lnc-PMEPA1-1:1
5.0 lnc-PMEPA1-1:1
5.1 lnc-SPATA2-98:1
5.2 lnc-PMEPA1-1:1