Transcript: lnc-PMM2-3:1

Basic information

LNCipedia transcript ID: lnc-PMM2-3:1 
LNCipedia gene ID: lnc-PMM2-3
Ensembl Gene ID: ENSG00000261481
Ensembl Transcript ID: ENST00000570290
Location (hg38): chr16:8869251-8870032
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 498 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000570290.1; RP11-77H9.6-001; OTTHUMT00000434267.1; NONHSAT140429
Alternative gene names: ENSG00000261481.1; RP11-77H9.6; OTTHUMG00000176902.1; AC022167.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -131.8909 non-coding 
CPAT coding probability 33.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PMM2-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PMM2-3:1
4.0 lnc-PMM2-3:1
4.1 lnc-PMM2-3:1
5.0 lnc-PMM2-3:1
5.1 lnc-SMIM22-54:1
5.2 lnc-PMM2-3:1