Transcript: lnc-PMM2-6:2

Basic information

LNCipedia transcript ID: lnc-PMM2-6:2 
LNCipedia gene ID: lnc-PMM2-6
Location (hg38): chr16:9108344-9112100
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 3757 bp
Exons: 1
Sources: NONCODE v4
Alternative transcript names: NONHSAT140448
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -17.826 non-coding 
CPAT coding probability 1.59% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PMM2-6:2 yes no no no

Available literature

  1. Wang (2015), Identification of lncRNA-associated competing triplets reveals global patterns and prognostic markers for cancer., Nucleic Acids Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PMM2-6:2
4.0 lnc-PMM2-6:2
4.1 lnc-PMM2-6:2
5.0 lnc-PMM2-6:2
5.1 lnc-SMIM22-61:4
5.2 lnc-PMM2-6:2