Transcript: lnc-PMM2-6:3

Basic information

LNCipedia transcript ID: lnc-PMM2-6:3 
LNCipedia gene ID: lnc-PMM2-6
Location (hg38): chr16:9104848-9106761
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1914 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000574285.1; RP11-473I1.9-001; OTTHUMT00000440762.1; NONHSAT140444
Alternative gene names: ENSG00000262944.1; RP11-473I1.9; OTTHUMG00000178148.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 9.5718 non-coding 
CPAT coding probability 0.45% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PMM2-6:3 yes no no no

Available literature

  1. Wang (2015), Identification of lncRNA-associated competing triplets reveals global patterns and prognostic markers for cancer., Nucleic Acids Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PMM2-5:1
4.0 lnc-PMM2-6:3
4.1 lnc-PMM2-6:3
5.0 lnc-PMM2-6:3
5.1 lnc-SMIM22-61:1
5.2 lnc-PMM2-6:3