Transcript: lnc-PMM2-6:4

Basic information

LNCipedia transcript ID: lnc-PMM2-6:4 
LNCipedia gene ID: lnc-PMM2-6
Ensembl Gene ID: ENSG00000263244
Ensembl Transcript ID: ENST00000574616
Location (hg38): chr16:9104848-9113181
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 8334 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000574616.2
Alternative gene names: ENSG00000263244.2; RP11-473I1.9; AC087190.4; AC087190.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 9.5718 non-coding 
CPAT coding probability 1.24% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PMM2-6:4 yes no no no

Available literature

  1. Wang (2015), Identification of lncRNA-associated competing triplets reveals global patterns and prognostic markers for cancer., Nucleic Acids Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-PMM2-6:4
4.1 lnc-PMM2-6:4
5.0 lnc-PMM2-6:4
5.1 lnc-SMIM22-61:2
5.2 lnc-PMM2-6:4