Transcript: lnc-PMP2-1:9

Basic information

LNCipedia transcript ID: lnc-PMP2-1:9 
LNCipedia gene ID: lnc-PMP2-1
Ensembl Gene ID: ENSG00000272425
Ensembl Transcript ID: ENST00000606235
Location (hg38): chr8:81275399-81277570
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2172 bp
Exons: 1
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000606235.1
Alternative gene names: ENSG00000272425.1; RP11-363E6.4; AC009902.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -91.6857 non-coding 
CPAT coding probability 0.87% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PMP2-1:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PMP2-2:1
4.0 lnc-PMP2-2:1
4.1 lnc-PMP2-1:9
5.0 lnc-PMP2-1:9
5.1 lnc-CPA6-156:9
5.2 lnc-PMP2-1:9