Transcript: lnc-PMP22-2:3

Basic information

LNCipedia transcript ID: lnc-PMP22-2:3 
LNCipedia gene ID: lnc-PMP22-2
Location (hg38): chr17:15276562-15279477
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 345 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; NONCODE v4
Alternative transcript names: TCONS_00025212; ENST00000453339; NONHSAT145800
Alternative gene names: XLOC_012397; linc-PMP22-1; ENSG00000237377; AC005703.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -25.417 non-coding 
CPAT coding probability 0.41% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PMP22-2:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PMP22-2:2
3.1 lnc-PMP22-2:3
4.0 lnc-PMP22-2:3
4.1 lnc-PMP22-2:3
5.0 lnc-PMP22-2:3
5.1 lnc-COPS3-79:2
5.2 lnc-PMP22-2:3