Transcript: lnc-PNPLA3-1:1

Basic information

LNCipedia transcript ID: lnc-PNPLA3-1:1 
LNCipedia gene ID: lnc-PNPLA3-1
Ensembl Gene ID: ENSG00000261251
Ensembl Transcript ID: ENST00000563715
Location (hg38): chr22:43812456-43817394
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 859 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000563715.1; RP3-388M5.9-002; OTTHUMT00000420290.1; NONHSAT087120
Alternative gene names: ENSG00000261251.1; RP3-388M5.9; OTTHUMG00000172728.1; Z97055.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -196.0175 non-coding 
CPAT coding probability 3.57% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PNPLA3-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PNPLA3-1:1
4.0 lnc-PNPLA3-1:1
4.1 lnc-PNPLA3-1:1
5.0 lnc-PNPLA3-1:1
5.1 lnc-FBLN1-36:6
5.2 lnc-PNPLA3-1:1