Transcript: lnc-PNPLA3-1:2

Basic information

LNCipedia transcript ID: lnc-PNPLA3-1:2 
LNCipedia gene ID: lnc-PNPLA3-1
Ensembl Gene ID: ENSG00000261251
Ensembl Transcript ID: ENST00000564696
Location (hg38): chr22:43812493-43813955
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1463 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000564696.1; RP3-388M5.9-001; OTTHUMT00000420291.1; NONHSAT087122
Alternative gene names: ENSG00000261251.1; RP3-388M5.9; OTTHUMG00000172728.1; Z97055.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -82.299 non-coding 
CPAT coding probability 19.23% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PNPLA3-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PNPLA3-1:2
4.0 lnc-PNPLA3-1:2
4.1 lnc-PNPLA3-1:2
5.0 lnc-PNPLA3-1:2
5.1 lnc-FBLN1-36:8
5.2 lnc-PNPLA3-1:2