Transcript: lnc-POC5-2:1

Basic information

LNCipedia transcript ID: lnc-POC5-2:1 
LNCipedia gene ID: lnc-POC5-2
Ensembl Gene ID: ENSG00000248127
Ensembl Transcript ID: ENST00000503652
Location (hg38): chr5:76081946-76084186
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 691 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000503652; ENST00000503652.1; CTC-235G5.3-001; OTTHUMT00000368746.1; NONHSAT102227
Alternative gene names: ENSG00000248127; CTC-235G5.3; ENSG00000248127.1; OTTHUMG00000162399.1; AC026774.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -129.7167 non-coding 
CPAT coding probability 34.11% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-POC5-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-POC5-1:1
3.1 lnc-POC5-2:1
4.0 lnc-POC5-2:1
4.1 lnc-POC5-2:1
5.0 lnc-POC5-2:1
5.1 lnc-ANKRD34B-89:1
5.2 lnc-POC5-2:1