Transcript: lnc-PODXL-3:2

Basic information

LNCipedia transcript ID: lnc-PODXL-3:2 
LNCipedia gene ID: lnc-PODXL-3
Ensembl Gene ID: ENSG00000273489
Ensembl Transcript ID: ENST00000610193
Location (hg38): chr7:131493964-131497694
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3731 bp
Exons: 1
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000610193.1
Alternative gene names: ENSG00000273489.1; RP11-180C16.1; AC008264.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -48.2097 non-coding 
CPAT coding probability 0.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PODXL-3:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PODXL-3:2
4.0 lnc-PODXL-3:2
4.1 lnc-PODXL-3:2
5.0 lnc-PODXL-3:2
5.1 lnc-COPG2-15:2
5.2 lnc-PODXL-3:2