Transcript: lnc-POFUT2-3:2

Basic information

LNCipedia transcript ID: lnc-POFUT2-3:2 
LNCipedia gene ID: lnc-POFUT2-3
Ensembl Gene ID: ENSG00000228355
Ensembl Transcript ID: ENST00000456613
Location (hg38): chr21:45378201-45379624
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 319 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00028960; ENST00000456613.1; BX322559.3-002; OTTHUMT00000206820.1; NONHSAT082956
Alternative gene names: XLOC_014126; linc-POFUT2-4; ENSG00000228355.1; BX322559.3; OTTHUMG00000090400.1; BX322559.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -74.656 non-coding 
CPAT coding probability 5.60% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-POFUT2-3:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-POFUT2-3:1
3.1 lnc-POFUT2-3:2
4.0 lnc-POFUT2-3:2
4.1 lnc-POFUT2-3:2
5.0 lnc-POFUT2-3:2
5.1 lnc-POFUT2-3:2
5.2 lnc-POFUT2-3:2