Transcript: lnc-POLR2J2-1:2

Basic information

LNCipedia transcript ID: lnc-POLR2J2-1:2 
LNCipedia gene ID: lnc-POLR2J2-1
Ensembl Gene ID: ENSG00000279168
Ensembl Transcript ID: ENST00000624140
Location (hg38): chr7:102672879-102678856
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 483 bp
Exons: 2
Sources: Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000624140.1
Alternative gene names: ENSG00000279168.2; AC105052.3; AC105052.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 20.2973 non-coding 
CPAT coding probability 12.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-POLR2J2-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 lnc-POLR2J2-1:2
5.1 lnc-POLR2J2-1:2
5.2 lnc-POLR2J2-1:2