Transcript: lnc-POLR3A-1:1

Basic information

LNCipedia transcript ID: lnc-POLR3A-1:1 
LNCipedia gene ID: lnc-POLR3A-1
Ensembl Gene ID: ENSG00000228683
Ensembl Transcript ID: ENST00000455498
Location (hg38): chr10:78696062-78697022
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 579 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00017999; ENST00000455498; ENST00000455498.1; RP11-31E13.2-001; OTTHUMT00000048937.1; NONHSAT015079
Alternative gene names: XLOC_008862; linc-POLR3A-5; ENSG00000228683; RP11-31E13.2; ENSG00000228683.1; OTTHUMG00000018556.1; AC016820.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -270.793 non-coding 
CPAT coding probability 5.68% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-POLR3A-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-POLR3A-1:1
3.1 lnc-POLR3A-1:1
4.0 lnc-POLR3A-1:1
4.1 lnc-POLR3A-1:1
5.0 lnc-POLR3A-1:1
5.1 lnc-VSIR-81:1
5.2 lnc-POLR3A-1:1