Transcript: lnc-POLR3E-2:1

Basic information

LNCipedia transcript ID: lnc-POLR3E-2:1 
LNCipedia gene ID: lnc-POLR3E-2
Ensembl Gene ID: ENSG00000260790
Ensembl Transcript ID: ENST00000568827
Location (hg38): chr16:22374859-22376273
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1415 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000568827.1; RP11-21M24.2-002; OTTHUMT00000430089.1; NONHSAT141058
Alternative gene names: ENSG00000260790.1; RP11-21M24.2; OTTHUMG00000175465.1; AC092338.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -95.5495 non-coding 
CPAT coding probability 4.43% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-POLR3E-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-POLR3E-2:1
4.0 lnc-POLR3E-2:1
4.1 lnc-POLR3E-2:1
5.0 lnc-POLR3E-2:1
5.1 lnc-TMC5-50:1
5.2 lnc-POLR3E-2:1