Transcript: lnc-POMGNT1-1:12

Basic information

LNCipedia transcript ID: lnc-POMGNT1-1:12 
LNCipedia gene ID: lnc-POMGNT1-1
Location (hg38): chr1:46175486-46176478
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 395 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000506599.1; RP11-322N21.2-001; OTTHUMT00000020145.1; NONHSAT002988
Alternative gene names: ENSG00000250719.1; RP11-322N21.2; OTTHUMG00000007603.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -121.6883 non-coding 
CPAT coding probability 53.96% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-POMGNT1-1:12 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-POMGNT1-1:1
4.0 lnc-POMGNT1-1:1
4.1 lnc-PIK3R3-1:6
5.0 lnc-PIK3R3-1:6
5.1 lnc-POMGNT1-1:6
5.2 lnc-POMGNT1-1:12