Transcript: lnc-POT1-1:1

Basic information

LNCipedia transcript ID: lnc-POT1-1:1 
LNCipedia gene ID: lnc-POT1-1
Ensembl Gene ID: ENSG00000224899
Ensembl Transcript ID: ENST00000454957
Location (hg38): chr7:125151326-125153611
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 600 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00013251; ENST00000454957; ENST00000454957.1; RP11-3B12.5-001; OTTHUMT00000347872.1; NONHSAT123099
Alternative gene names: XLOC_006593; linc-POT1-2; ENSG00000224899; RP11-3B12.5; ENSG00000224899.1; OTTHUMG00000157196.1; AC019155.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -129.9746 non-coding 
CPAT coding probability 1.45% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-POT1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-POT1-1:1
3.1 lnc-POT1-1:1
4.0 lnc-POT1-1:1
4.1 lnc-POT1-1:1
5.0 lnc-POT1-1:1
5.1 lnc-RNF133-19:1
5.2 lnc-POT1-1:1