Transcript: lnc-POTEC-5:1

Basic information

LNCipedia transcript ID: lnc-POTEC-5:1 
LNCipedia gene ID: lnc-POTEC-5
Location (hg38): chr18:15301225-15304782
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2402 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00026436; NONHSAT058556
Alternative gene names: XLOC_012784; linc-POTEC-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 17.0436 non-coding 
CPAT coding probability 1.43% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-POTEC-5:1 no no no no

Available literature

  1. Wang (2015), Expression profile of long non-coding RNAs in pancreatic cancer and their clinical significance as biomarkers., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-POTEC-1:1
3.1 lnc-POTEC-5:1
4.0 lnc-POTEC-5:1
4.1 lnc-POTEC-5:1
5.0 lnc-POTEC-5:1
5.1 lnc-SMAD2-220:1
5.2 lnc-POTEC-5:1