Transcript: lnc-POTEC-5:2

Basic information

LNCipedia transcript ID: lnc-POTEC-5:2 
LNCipedia gene ID: lnc-POTEC-5
Location (hg38): chr18:15301186-15303067
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 468 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00026681; NONHSAT058555
Alternative gene names: XLOC_012784; linc-POTEC-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -14.9685 non-coding 
CPAT coding probability 2.00% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-POTEC-5:2 no no no no

Available literature

  1. Wang (2015), Expression profile of long non-coding RNAs in pancreatic cancer and their clinical significance as biomarkers., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-POTEC-1:2
3.1 lnc-POTEC-5:2
4.0 lnc-POTEC-5:2
4.1 lnc-POTEC-5:2
5.0 lnc-POTEC-5:2
5.1 lnc-SMAD2-220:2
5.2 lnc-POTEC-5:2