Transcript: lnc-POTEG-14:15

Basic information

LNCipedia transcript ID: lnc-POTEG-14:15 
LNCipedia gene ID: lnc-POTEG-14
Location (hg38): chr14:19295865-19337628
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1013 bp
Exons: 6
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000549813; ENST00000549813.1; CTD-2314B22.3-011; OTTHUMT00000409415.1; NONHSAT035505
Alternative gene names: ENSG00000244306; CTD-2314B22.3; ENSG00000244306.4; OTTHUMG00000170430.3; ENSG00000244306.5; FLJ39632


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 5.6714 non-coding 
CPAT coding probability 3.55% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-POTEG-14:15 no no no no

Available literature

  1. Qiu (2015), Long non-coding RNA LINC01296 is a potential prognostic biomarker in patients with colorectal cancer., Tumour Biol.
  2. Ding (2014), Expression and clinical significance of the long non-coding RNA PVT1 in human gastric cancer., Onco Targets Ther
  3. Cao (2013), Analysis of long non-coding RNA expression profiles in gastric cancer., World J. Gastroenterol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-POTEM-2:12
3.1 lnc-POTEM-2:12
4.0 LINC01296:21
4.1 LINC01296:21
5.0 LINC01296:21
5.1 lnc-TEP1-21:15
5.2 lnc-POTEG-14:15