Transcript: lnc-POTEH-3:2

Basic information

LNCipedia transcript ID: lnc-POTEH-3:2 
LNCipedia gene ID: lnc-POTEH-3
Ensembl Gene ID: ENSG00000225255
Ensembl Transcript ID: ENST00000438574
Location (hg38): chr22:15765687-15778297
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 519 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000438574; ENST00000438574.1; LA16c-83F12.6-001; OTTHUMT00000276778.1; NONHSAT083094
Alternative gene names: ENSG00000225255; LA16c-83F12.6; ENSG00000225255.2; OTTHUMG00000140260.2; ENSG00000225255.6; LINC01297


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 9.2276 non-coding 
CPAT coding probability 1.80% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-POTEH-3:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-POTEH-1:2
3.1 lnc-AP000525.1-1:2
4.0 lnc-POTEH-3:2
4.1 lnc-POTEH-3:2
5.0 lnc-POTEH-3:2
5.1 lnc-SERPIND1-102:3
5.2 lnc-POTEH-3:2