Transcript: lnc-POTEH-7:1

Basic information

LNCipedia transcript ID: lnc-POTEH-7:1 
LNCipedia gene ID: lnc-POTEH-7
Ensembl Gene ID: ENSG00000206195
Ensembl Transcript ID: ENST00000413768
Location (hg38): chr22:15784959-15827434
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2102 bp
Exons: 8
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT083086; ENST00000413768.1; ENST00000413768.5
Alternative gene names: ENSG00000206195.6; AP000525.9; ENSG00000206195.10; DUXAP8


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 7.9415 non-coding 
CPAT coding probability 3.68% non-coding 
Bazzini small ORFs 1 coding 
seqAAMWLQMAGFPKGFWLKHIPWCICTAVSSSLQLCLNRSFTMLSSRFNSMAPNDEISF
orfFrame7.23866294
covF1Prop0.169811321

In stringent set: no

Locus conservation

Locus conservation?
lnc-POTEH-7:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AP000525.1-3:1
4.0 lnc-AP000525.1-3:1
4.1 lnc-AP000525.1-3:1
5.0 lnc-AP000525.1-3:1
5.1 lnc-SERPIND1-100:1
5.2 lnc-POTEH-7:1