Transcript: lnc-POTEM-1:5

Basic information

LNCipedia transcript ID: lnc-POTEM-1:5 
LNCipedia gene ID: lnc-POTEM-1
Ensembl Gene ID: ENSG00000258265
Ensembl Transcript ID: ENST00000549951
Location (hg38): chr14:18944199-18945139
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 381 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000549951.1; CTD-2311B13.2-001; OTTHUMT00000408576.1; NONHSAT035454
Alternative gene names: ENSG00000258265.1; CTD-2311B13.2; OTTHUMG00000170339.1; AL929601.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -8.6063 non-coding 
CPAT coding probability 0.10% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-POTEM-1:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-POTEG-1:1
4.0 lnc-POTEG-1:1
4.1 lnc-POTEG-1:1
5.0 lnc-POTEG-1:1
5.1 lnc-OR4K15-39:1
5.2 lnc-POTEM-1:5