Transcript: lnc-POU1F1-1:2

Basic information

LNCipedia transcript ID: lnc-POU1F1-1:2 
LNCipedia gene ID: lnc-POU1F1-1
Location (hg38): chr3:86905677-86910747
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 912 bp
Exons: 4
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00006553; NONHSAT090682
Alternative gene names: XLOC_003177; linc-GBE1-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -112.7744 non-coding 
CPAT coding probability 0.96% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-POU1F1-1:2 yes no no no

Available literature

  1. Yang (2015), Genome-wide analysis of long noncoding RNA profile in human gastric epithelial cell response to Helicobacter pylori., Jpn. J. Infect. Dis.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-VGLL3-1:1
3.1 lnc-VGLL3-1:1
4.0 lnc-VGLL3-1:1
4.1 lnc-VGLL3-1:1
5.0 lnc-VGLL3-1:1
5.1 lnc-CGGBP1-6:1
5.2 lnc-POU1F1-1:2