Transcript: lnc-POU3F1-2:1

Basic information

LNCipedia transcript ID: lnc-POU3F1-2:1 
LNCipedia gene ID: lnc-POU3F1-2
Location (hg38): chr1:38300109-38311378
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 455 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00001460; NONHSAT002513
Alternative gene names: XLOC_000789; linc-POU3F1-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -226.1066 non-coding 
CPAT coding probability 1.46% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-POU3F1-2:1 no no no no

Available literature

  1. Yang (2015), Genome-wide analysis of long noncoding RNA profile in human gastric epithelial cell response to Helicobacter pylori., Jpn. J. Infect. Dis.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-POU3F1-2:1
3.1 lnc-POU3F1-2:1
4.0 lnc-POU3F1-2:1
4.1 lnc-POU3F1-2:1
5.0 lnc-POU3F1-2:1
5.1 lnc-PABPC4-12:2
5.2 lnc-POU3F1-2:1