Transcript: lnc-POU3F2-3:1

Basic information

LNCipedia transcript ID: lnc-POU3F2-3:1 
LNCipedia gene ID: lnc-POU3F2-3
Location (hg38): chr6:98210020-98214683
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 771 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000418652; ENST00000418652.1; RP11-111D3.2-001; OTTHUMT00000041582.1; NONHSAT114101
Alternative gene names: ENSG00000236920; RP11-111D3.2; ENSG00000236920.1; OTTHUMG00000015254.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -100.3667 non-coding 
CPAT coding probability 0.03% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-POU3F2-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-POU3F2-2:1
3.1 lnc-POU3F2-3:1
4.0 lnc-POU3F2-3:1
4.1 lnc-POU3F2-3:1
5.0 lnc-POU3F2-3:1
5.1 lnc-PM20D2-62:1
5.2 lnc-POU3F2-3:1