Transcript: lnc-POU3F3-3:1

Basic information

LNCipedia transcript ID: lnc-POU3F3-3:1 
LNCipedia gene ID: lnc-POU3F3-3
Ensembl Gene ID: ENSG00000236109
Ensembl Transcript ID: ENST00000438566
Location (hg38): chr2:104583152-104585354
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 451 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00002960; ENST00000438566; ENST00000438566.1; AC013402.3-001; OTTHUMT00000329250.1; NONHSAT072932
Alternative gene names: XLOC_001603; linc-POU3F3-4; ENSG00000236109; AC013402.3; ENSG00000236109.1; OTTHUMG00000153055.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -499.1048 non-coding 
CPAT coding probability 8.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-POU3F3-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-POU3F3-3:1
3.1 lnc-POU3F3-3:1
4.0 lnc-POU3F3-3:1
4.1 lnc-POU3F3-3:1
5.0 lnc-POU3F3-3:1
5.1 lnc-SLC9A4-53:1
5.2 lnc-POU3F3-3:1